2017

PAG XXV

Talks

Sezen, U. U., Neale, D. B., McGuire, P. E., Wheeler, N. C., Stevens, K. A., Crepeau, M. W., Cardeno, C., Zimin, A. V., Puiu, D., Pertea, G. M., Sablok, G., Casola, C., Koralewski, T. E., Paul, R., Gonzalez-Ibeas, D., Cronn, R., Yandell, M., Holt, C., Langley, C. H., Yorke, J. A., Salzberg, S. L., Wegrzyn, J. L. 2017. A reference draft genome for Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco). International Plant and Animal Genome XXV Conference, W352, Forest Tree Workshop, San Diego, CA. 15 January 2017

2016

PAG XXIV

Talks

Demurjian Jr., S. A., Grau, E., Vasquez-Gross, H., Gessler, D., Neale, D., Wegrzyn, J. 2016. TreeGenes and CartograTree: Community resources for forest tree genomics. International Plant and Animal Genome XXIV Conference, C07 Computer Demonstration, San Diego, CA. 9 January 2016

Grau, E., Demurjian Jr., S. A., Vasquez-Gross, H., Gessler, D., Staton, M., Jung, S., Feltus, A., Main, D., Ficklin, S. P., Neale, D., Wegrzyn, J. 2016. TreeGenes: Enabling visualization and analysis in forest tree genomics. International Plant and Animal Genome XXIV Conference, W970, Tripal Database Network and Initiatives Workshop, San Diego, CA. 10 January 2016

Humann, J. L., Ficklin, S. P., Lee, T., Cheng, C.-H., Jung, S., Wegrzyn, J., Neale, D., Main, D. 2016. GenSAS v4.0: A web-based platform for structural and functional genome annotation and curation. International Plant and Animal Genome XXIV Conference, C25 Computer Demonstration, San Diego, CA. 13 January 2016

Martinez-Garcia, P. J., Gonzalez-Ibeas, D., Famula, R. A., Delfino-Mix, A., Stevens, K. A., Puryear, J. D., Loopstra, C. A., Langley, C. H., Neale, D. B., Wegrzyn, J. L. 2016. A comprehensive study of the sugar pine (Pinus lambertiana) transcriptome implemented through diverse next-generation sequencing approaches. International Plant and Animal Genome XXIV Conference, W321, Forest Tree Workshop, San Diego, CA. 10 January 2016

Paul, R., Stevens, K. A., Gonzalez-Ibeas, D., Pratt, K., Zimin, A., Yorke, J. A., Holtz-Morris, A., Koriabine, M., Crepeau, M., Puiu, D., Salzberg, S. L., deJong, P. J., Langley, C. H., Neale, D. B., Wegrzyn, J. L. 2016. Elucidation of transposable elements in conifers and their effect on conifer evolution. International Plant and Animal Genome XXIV Conference, W959, Transposable Elements Workshop, San Diego, CA. 10 January 2016

Sezen, U. U., Baker, E. A. G., Falk, T., Maloney, P. E., Vogler, D. R., Delfino-Mix, A., Jensen, C. E., Mitton, J. B., Wright, J., Knaus, B., Rai, H. S., Cronn, R., Gonzalez-Ibeas, D., Vasquez-Gross, H., Famula, R., Liu, J.-J., Kueppers, L. M., Salzberg, S. L., Langley, C. H., Stevens, K., Puiu, D., Zimin, A., Yorke, J. A., Crepeau, M., Loopstra, C., Puryear, J., Neale, D., Wegrzyn, J. 2016. Signatures of selection among de novo assembled transcriptomes of four white pine species. International Plant and Animal Genome XXIV Conference, W740, Population and Conservation Genomics Workshop, San Diego, CA. 9 January 2016

Posters

Demurjian Jr., S. A., Grau, E., Vasquez-Gross, H., Gessler, D., Neale, D., Wegrzyn, J. 2016. TreeGenes and CartograTree: Community resources for forest tree genomics. International Plant and Animal Genome XXIV Conference, Poster 0383, San Diego, CA. 8-13 January 2016

Humann, J. L., Ficklin, S. P., Lee, T., Cheng, C.-H., Jung, S., Wegrzyn, J., Neale, D., Main, D. 2016. GenSAS v4.0: An easy-to-use, web-based platform for structural and functional genome annotation and Curation. International Plant and Animal Genome XXIV Conference, Poster 0364, San Diego, CA. 8-13 January 2016

Other meetings

Talks

Wegrzyn, J. L., et al. 2016. An overview of TreeGenes and CartograTree. US Forest Service: Gene conservation of tree species, Chicago IL. May 2016.

Wegrzyn, J. L., et al. 2016. Complex conifer gene families and their evolution. ProCoGen: Conifer Genomics Conference, Orleans, France. December 2016

2015

PAG XXIII

Talks

Ficklin, S. P., Lee T., Humann, J. L., Cheng, C.-H., Wegrzyn, J., Neale, D., Main, D. 2015. GenSAS: A web-based platform for automated and manual curation of genomic sequence. International Plant and Animal Genome XXIII Conference, C03 Computer Demonstration, San Diego, CA. 10 January 2015

Grau, E., Vasquez-Gross, H., Liechty, J., Zieve, J., Gessler, D., Neale, D., Wegrzyn, J. 2015. TreeGenes: a comprehensive resource for forest tree genomics. International Plant and Animal Genome XXIII Conference, W311, Forest Tree Workshop, San Diego, CA. 11 January 2015

Grau, E., Vasquez-Gross, H., Liechty, J., Zieve, J., Gessler, D., Neale, D., Wegrzyn, J. 2015. TreeGenes and CartograTree: tools for forest tree genomics. International Plant and Animal Genome XXIII Conference, C19 Computer Demonstration, San Diego, CA. 13 January 2015

Main, D., Ficklin, S. P., Lee, T., Humann, J. L., Cheng, C.-H., Wegrzyn, J., Neale, D. 2015.0GenSAS. International Plant and Animal Genome XXIII Conference, W571, Pine Genome Reference Sequence Workshop, San Diego, CA. 10 January 2015

Stevens, K., Crepeau, M., Puiu, D., Zimin, A., Wegrzyn, J., Koriabine, M., Cardeno, C., Holtz-Morris, A., deJong, P. J., Salzberg, S. L., Yorke, J. A., Langley, C., Neale, D. B. 2015. A reference genome sequence for sugar pine (Pinus lambertiana). International Plant and Animal Genome XXIII Conference, W568, Pine Genome Reference Sequence Workshop, San Diego, CA. 10 January 2015

Wegrzyn, J., Stevens, K., Paul, R., Gonzalez-Ibeas, D., Martinez-Garcia, P. J., Liechty, J., Vasquez-Gross, H., Kuruganti, S., Grau, E., Loopstra, C., Zimin, A., Yorke, J. A., Crepeau, M., Puiu, D., Holt, C., Yandell, M., Salzberg, S. L., deJong, P. J., Mockaitis, K., Main, D., Langley, C. H., Neale, D. Sugar pine annotation. International Plant and Animal Genome XXIII Conference, W569, Pine Genome Reference Sequence Workshop, San Diego, CA. 10 January 2015

Zimin, A., Marçais, G., Puiu, D., Stevens, K., Roberts, M., Salzberg, S., Yorke, J. 2015. Moving toward loblolly pine 2.0, improvements of assembly techniques for mega-genomes. International Plant and Animal Genome XXIII Conference, W570, Pine Genome Reference Sequence Workshop, San Diego, CA. 10 January 2015

 

Posters

Ficklin, S. P., Lee T., Humann, J. L., Cheng, C.-H., Wegrzyn, J., Neale, D., Main, D. 2015. GenSAS: A web-based platform for automated and manual curation of genomic sequence. International Plant and Animal Genome XXIII Conference, Poster P1153, San Diego, CA. 10-14 January 2015

Gonzalez-Ibeas, D., Martinez-Garcia, P. J., Famula, R., Loopstra, C. A., Puryear, J., Neale, D. B., Wegrzyn, J. L. 2015. Survey of the sugar pine (Pinus lambertiana) transcriptome by deep sequencing. International Plant and Animal Genome XXIII Conference, Poster P0987, San Diego, CA. 10-14 January 2015

Grau, E., Vasquez-Gross, H., Liechty, J., Zieve, J., Gessler, D., Neale, D., Wegrzyn, J. 2015. TreeGenes and CartograTree: tools for forest tree genomics. International Plant and Animal Genome XXIII Conference, Poster P1232, San Diego, CA. 10-14 January 2015

Paul, R., Stevens, K. A., Martinez-Garcia, P. J., Zimin, A., Holtz-Morris, A., Yorke, J. A., Koriabine, M., Crepeau, M., Puiu, D., Salzberg, S. L., deJong, P. J., Langley, C. H., Kurugunti, S., Neale, D. B., Wegrzyn, J. L. 2015. Repeat sequence characterization in sugar pine (Pinus lambertiana) and loblolly pine (Pinus taeda).International Plant and Animal Genome XXIII Conference, Poster  P0988, San Diego, CA. 10-14 January 2015

Other meetings

Talks

Neale, D. B. 2015. The PineRefSeq Project. National Convention of the Society of American Foresters, Baton Rouge LA. 3-7 November 2015

Neale, D. B. 2015. Comparative genomics of conifers. 35th New Phytologist Symposium: The genome of forest trees, Arnold Arboretum of Harvard University, Boston MA. 16-17 June 2015

Wegrzyn, J. L. 2015. Computational tools and resources for comparative tree genomics. 3rd Conifer Genome Sequencing Summit, Gysinge, Sweden. 28-30 September 2015

Wegrzyn, J. L. 2015. Computational tools and resources for comparative tree genomics. 35th New Phytologist Symposium: The genome of forest trees, Arnold Arboretum of Harvard University, Boston MA. 16-17 June 2015

Wegrzyn, J. L. 2015. The PineRefSeq Project. IUFRO Tree Biotechnology Conference in Florence, Italy. 8-12 June 2015

Wheeler, N. C. 2015. Conifer reference genome sequencing. National Convention of the Society of American Foresters, Baton Rouge LA. 3-7 November 2015

Wheeler, N. C. 2015. Conifer reference genome sequencing. Western Forest Genetics Association and NW Seed Orchard Managers Association 2015 Joint Annual Meeting, Seattle WA. 23-24 June 2015

2014

PAG XXII

Talks

Langley, C.H., Wegrzyn, J. L., Stevens, K., Zimin, A., Puiu, D., Crepeau, M., Cardeno, C., Koriabine, M., Holtz-Morris, A., Liechty, J., Martinez-Garcia, P. J., Vasquez-Gross, H., Lin, B. Y., Zieve, J. J., Dougherty, M., Fuentes-Soriano, S., Wu, L., Gilbert, D., Marçais, G., Roberts, M., Holt, C., Yandell, M., Davis, J. M., Smith, K., Dean, J. F. D., Lorenz, W. W., Whetten, R. W., Sederoff, R., Wheeler, N., McGuire, P., Main, D., Mockaitis, K., Loopstra, C., deJong, P. J., Yorke, J. A., Salzberg, S. L., Neale, D. B. 2014. The loblolly pine genome, v1.0. International Plant and Animal Genome XXII Conference, W558, Pine Genome Reference Sequence Workshop, San Diego, CA. 11 January 2014

Martinez-Garcia, P. J., Stevens, K., Crepeau, M., Liechty, J., Cardeno, C., Wegrzyn, J. L., Langley, C. H., Neale, D. 2014. Genetic mapping of scaffolds by whole genome shotgun sequencing. International Plant and Animal Genome XXII Conference, W563, Pine Genome Reference Sequence Workshop, San Diego, CA. 11 January 2014

Mockaitis, K., Wu, L.-S., Loopstra, C., Fuentes-Soriano, S., Gilbert, D. 2014. Gene expression in conifers revealed on a comprehensive scale: Sequencing, assembly, and classification of the loblolly pine transcriptome. International Plant and Animal Genome XXII Conference, W561, Pine Genome Reference Sequence Workshop, San Diego, CA. 11 January 2014

Stevens, K., Crepeau, M., Martinez-Garcia, P. J., Zimin, A., Puiu, D., Koriabine, M., Cardeno, C., Holtz-Morris, A., deJong, P. J., Salzberg, S. L., Yorke, J. A., Langley, C., Neale, D. 2014. Recent progress in the shotgun sequencing of conifer mega-genomes. International Plant and Animal Genome XXII Conference, W562, Pine Genome Reference Sequence Workshop, San Diego, CA. 11 January 2014

Wegrzyn, J.L., Liechty, J., Stevens, K., Loopstra, C., Vasquez-Gross, H., Lin, B., Dougherty, M., Zieve, J., Martinez-Garcia, P. J., Holt, C., Yandell, M., Zimin, Yorke, J. A., Crepeau, M., Puiu, D., Salzerberg, S. L., deJong, P. J., Mockaitis, K., Main, D., Langley, C. H., Neale, D. 2014. Annotation of the loblolly pine megagenome. International Plant and Animal Genome XXII Conference, W559, Pine Genome Reference Sequence Workshop, San Diego, CA. 11 January 2014

Wegrzyn, J., Liechty, J., Stevens, K., Loopstra, C., Vasquez-Gross, H., Lin, B., Zieve, J., Martinez-Garcia, P. J., Holt, C., Yandell, M., Zimin, Yorke, J. A., Crepeau, M., Puiu, D., Salzberg, S. L., deJong, P. J., Mockaitis, K., Main, D., Langley, C. H., Neale, D. 2014. Introns, ancient transposable elements, and gene families revealed in the annotation of the loblolly pine (Pinus taeda L.) megagenome. International Plant and Animal Genome XXII Conference, W512, Next Generation Genome Annotation and Analysis Workshop, San Diego, CA. 11 January 2014

Wegrzyn, J., Zieve, J., Vasquez-Gross, H., Lin, D., Zheng, J., Neale, D. 2014. Bioinformatic solutions in forest genomics: Accessing the TreeGenes database. International Plant and Animal Genome XXII Conference, C13 Computer Demonstration, San Diego, CA. 13 January 2014

Zieve, J., Vasquez-Gross, H., Gessler, D., Neale, D., Wegrzyn, J. 2014. Cartogratree: Enabling forest tree genomics through association studies. International Plant and Animal Genome XXII Conference, C11 Computer Demonstration, San Diego, CA. 13 January 2014

Zimin, A., Salzberg, S. L., Puiu, D., Stevens, K., Roberts, M., Yorke, J. A. Marçais, G., Langley, C. 2014. Assembly improvements to move beyond loblolly pine assembly v1.0. International Plant and Animal Genome XXII Conference, W564, Pine Genome Reference Sequence Workshop, San Diego, CA. 11 January 2014

Posters

Chhatre, V. E., Westbrook, J., Echt, C. S., Gomide Neves, L., Martinez-Garcia, P. J., Munoz, P. R., Kirst, M., Peter, G. F., Neale, D., Davis, J. M., Nelson, C. D. 2014. A high-density, consensus linkage map for loblolly pine. International Plant and Animal Genome XXII Conference, Poster P0490, San Diego, CA. 10-14 January 2014

Fuentes-Soriano, S., Loopstra, C., Mockaitis, K. 2014. Phylogenetic diversity of the MADS-box gene family in loblolly pine. International Plant and Animal Genome XXII Conference, Poster P0492, San Diego, CA. 10-14 January 2014

Wegrzyn, J., Zieve, J., Vasquez-Gross, H., Lin, D., Zheng, J., Neale, D. 2014. Bioinformatic solutions in forest genomics: Accessing the Treegenes database. International Plant and Animal Genome XXII Conference, Poster P1008, San Diego, CA. 10-14 January 2014

Zieve, J., Vasquez-Gross, H., Gessler, D., Neale, D., Wegrzyn, J. 2014. Cartogratree: Enabling forest tree genomics through association studies. International Plant and Animal Genome XXII Conference, Poster P1049, San Diego, CA. 10-14 January 2014

Other meetings

Talks

Mockaitis, K. 2014. Genomic sources of chemical defenses in trees from pine to avocado: New references for understanding large enzyme family conservation and diversification. Academic and Technical Workshop on Xyleborus glabratus and Euwallacea sp., INECOL, Xalapa, Mexico. 6 November 2014

Mockaitis, K. 2014. References for gene expression in loblolly pine. Conifer Genome Summit, Forêt Montmorency, Québec, Canada. 17 June 2014

Neale, D. B. 2014. Genome sequencing in conifers: Implications for breeding and gene resource management. Five Needle Pines IUFRO Meeting, Ft. Collins, CO. June 2014

Neale, D. B. 2014. Genome sequencing in conifers: Implications for breeding and gene resource management. IUFRO Forest Tree Breeding Conference, Prague, Czech Republic. August 2014.

Neale, D. B. 2014. Genome sequencing in conifers: Implications for breeding and gene resource management. Pinus radiata genome meeting, SCION, New Zealand. November 2014

Neale, D. B. 2014. Genome sequencing in conifers: Implications for breeding and gene resource management. Third Workshop of the AForGen Network, Falfleralp, Switzerland. June 2014

Wegrzyn, J. L. 2014. The loblolly pine genome. Seminar, University of Connecticut, Storrs CT. October 2014

Wegrzyn, J. L. 2014. White pine transcriptomes. Five Needle Pines IUFRO Meeting, Ft. Collins, CO. June 2014

Wegrzyn, J. L. 2014. The PineRefSeq Project. Seminar, Virginia Commonwealth University, Richmond VA. November 2014

Wegrzyn, J. L. 2014. The PineRefSeq Project. Pinus radiata genome meeting, SCION, New Zealand. November 2014

Posters

Mockaitis, K., Wu, L.-S., Fuentes-Soriano, S., Loopstra, C., Gilbert, D. 2014. Gene expression in Pinus taeda, the largest reference genome to date: Sequencing, assembly, and classification of the loblolly pine transcriptome. Advances in Genome Biology and Technology, Marco Island, FL. 12-16 February 2014

2013

PAG XXI

Talks

Crepeau, M., Puiu, D., Holtz-Morris, A., Koriabine, M., Cardeno, C., Zimin, A., deJong, P., Langley, C., Salzberg, S. L., Stevens, K. 2013. Sequencing strategies in conifer. International Plant and Animal Genome XXI Conference, W537, Pine Genome Reference Sequence Workshop, San Diego CA. 12 January 2013

Mockaitis, K., Fuentes-Soriano, S., Loopstra, C., Wegrzyn, J. 2013. Building references for functional genomics of conifer development: deep sequencing and comparative gene expression in reproductive tissues and seeds of Loblolly pine. International Plant and Animal Genome XXI Conference, W540, Pine Genome Reference Sequence Workshop, San Diego CA. 12 January 2013

Martinez-Garcia, P. J., Stevens, K., Wegrzyn, J., Liechty, J., Crepeau, M., Langley, C., Neale, D. 2013. A comprehensive high-density genetic linkage map for Loblolly pine (Pinus taeda L.). International Plant and Animal Genome XXI Conference, W541, Pine Genome Reference Sequence Workshop, San Diego CA. 12 January 2013

Wegrzyn J., Lin, B., Zieve, J., Stevens, K., Neale, D., Martinez-Garcia, P. J., Dougherty, M. 2013. Insights into the Loblolly pine genome: Characterization of fosmid sequences. International Plant and Animal Genome XXI Conference, W539, Pine Genome Reference Sequence Workshop, San Diego CA. 12 January 2013

Zimin, A. 2013. Assembly of the 24Gb Loblolly pine genome from WGS short read data. International Plant and Animal Genome XXI Conference, W538, Pine Genome Reference Sequence Workshop, San Diego CA. 12 January 2013

 

Posters

Main, D., Lee, T., Zheng, P., Jung, S., Ficklin, S. P., Humann, J., Wegrzyn, J., Neale, D. 2013. GenSAS: Genome Sequence Annotation Server, a tool for online annotation and curation. Poster P0985. International Plant and Animal Genome XXI Conference, San Diego CA. 12-16 January 2013

Wegrzyn, J., Figueroa, B., Yu, J., Vasquez-Gross, H., Liechty, J., Lin, B., Zieve, J., Ip, J., Neale, D. 2013. Bioinformatic solutions in forest genomics: Accessing the TreeGenes database. Poster P0948. International Plant and Animal Genome XXI Conference, San Diego CA. 12-16 January 2013

Other meetings

Talks

Mockaitis, K. 2013. Activity and adaptation in two tree genomes: Approaches to gene annotation and intraspecies genic diversity in Theobroma cacao and Pinus taeda. LANGEBIO, CINVESTAV, Irapuato, Mexico. 11 June 2013

Mockaitis, K. 2013. Deep transcriptomes of loblolly pine: Building references for functional genomics in the largest genome sequenced to date. Arkansas Center for Plant Powered Production, Jonesborough AR. 16 October 2013

Mockaitis, K. 2013. Defining genes in the largest genome: Transcript discovery in loblolly pine. Indiana University-Purdue University (IUPUI), Indianapolis IN. 26 April 2013

Neale, D. B. 2013. Genome to germplasm meeting. INRA Versailles, France. 28 February – 2 March 2013

Neale, D. B. 2013. Genomics of forest trees: Genome sequencing, marker-assisted breeding, and landscape genomics. Barcelona CRAG, Spain. 8 February 2013

Neale, D. B. 2013. Genomics of forest trees: Genome sequencing, marker-assisted breeding, and landscape genomics. CEBAS-CSIC Murcia, Spain. 6 February 2013

Neale, D. B. 2013. Genomics of forest trees: Genome sequencing, marker-assisted breeding, and landscape genomics. INIA Madrid, Spain. 5 February 2013

Neale, D. B. 2013. Loblolly Pine Genome Project. USDA, National Institute of Food and Agriculture. AFRI Plant Genome, Genetics and Breeding Project Director Meeting. Town & Country Hotel, San Diego CA. 11 January 2013

Neale, D. B. 2013. Pine Genome Sequencing Project. ProCoGen Training Workshop, Genome sequencing and gene discovery. Umeå, Sweden. 30 January – 1 February 2013

Wheeler, N. C. 2013. Conifer reference genome sequences and applied tree breeding. Pacific Northwest Tree Improvement Research Cooperative Meeting, World Forestry Center, Portland OR. 24 October 2013

Wheeler, N. C. 2013. The pine reference genome sequence and applied tree breeding. Western Gulf Tree Improvement Cooperative Meeting. Idabel OK. 15-16 May 2013

Wheeler, N. C. 2013. The pine reference genome sequence and applied tree breeding. Southern Forest Tree Improvement Conference. Clemson SC. 10-13 June 2013

Zimin, A. et al. 2013. Assembly of complex genomes. Livestock functional genomics summer school, Araçatuba, Brazil. 13-21 September 2013

Posters

Marçais, G. et al. 2013. The MaSuRCA genome assembler. Biology of Genomes Conference, Cold Spring Harbor Laboratory, New York. May 2013

Puiu, D. et al. 2013. Sequencing and assembly of the 22-gigabase genome of loblolly pine. Biology of Genomes Conference, Cold Spring Harbor Laboratory, New York. May 2013

2012

PAG XX

Talks

Langley, C. 2012. A two-pronged approach to the loblolly genome sequence. International Plant and Animal Genome XX Conference, W511, Pine Genome Reference Sequence Workshop, San Diego CA. 14 January 2012

Mockaitis, K., Loopstra, C., Main, D., Wegrzyn, J. 2012. Gene expression in loblolly pine early development. International Plant and Animal Genome XX Conference, W513, Pine Genome Reference Sequence Workshop, San Diego CA. 14 January 2012

Neale, D., deJong, P. J., Langley, C. H., Salzberg, S. L., Yorke, J. A., Mockaitis, K., Loopstra, C., Main, D., Wegrzyn, J. 2012. Introduction to the PineRefSeq Project. International Plant and Animal Genome XX Conference, Pine Genome Reference Sequence Workshop, San Diego CA. 14 January 2012

Wegrzyn, J. 2012. Integrating genome and transcriptome resources into the TreeGenes database. International Plant and Animal Genome XX Conference, W514, Pine Genome Reference Sequence Workshop, San Diego CA. 14 January 2012

Zimin, A., Marçais, G., Roberts, M., Salzberg, S. L., Yorke, J. A. 2012. Assembly of huge plant genomes from WGS data. International Plant and Animal Genome XX Conference, W512, Pine Genome Reference Sequence Workshop, San Diego CA. 14 January 2012

Posters

Neale D, de Jong P, Langley C, Loopstra C, Main D, Mockaitis K, Salzberg SL, Yorke JA, Wegrzyn J, and Wheeler N. 2012. PineRefSeq: Genome sequences for loblolly pine, Douglas-fir, and sugar pine. Poster P0060. Plant & Animal Genome XX Conference, San Diego CA. 14–18 January 2012.

Wegrzyn J, Figueroa B, Yu J, Liechty J, Vasquez-Gross H, Lin B, Zieve J, and Neale D. 2012. Bioinformatic solutions in forest genomics: Overview of the resources from the TreeGenes database. Poster P0963. Plant & Animal Genome XX Conference, San Diego CA. 14–18 January 2012

Other meetings

Talks

Neale, D. B. 2012. Forest tree genomics: Genome sequencing (de novo and resequencing), marker-based breeding, and landscape genomics. Fronteras en Ecologia y Evolucion Seminarios. Instituto de Ecologia UNAM, Mexico City, Mexico. 24 September 2012

Neale, D. B. 2012. Genomics-based breeding in forest trees: Are we there yet and why we need a reference genome to finish the job. USDA NIFA and DOE BER Project Director Meeting. Town and Country Resort, San Diego, CA, 13 January 2012

Neale, D. B. 2012. Landscape approaches to studying plant adaptation in natural plant populations. New Phytologist Workshop: Ecological and Evolutionary Genomics of Plant Adaptation, Old Townhouse, University of Aberdeen, United Kingdom. 28-29 June 2012

Neale, D. B. 2012. Landscape genomic approaches to understanding plant adaptation to the environment in changing climate. Eidg. Forschungsanstalt fr Wald, Schnee und Landschaft (WSL), Birmensdorf/Zurich, Switzerland. 8-9 February 2012

Neale, D. B. 2012. Landscape genomics of North American conifers. Adaptive Landscape Genetics current insights and future directions. University of Neuchatel, Switzerland. 7-8 February 2012.

Neale, D. B. 2012. Possibilities for genome sequencing in alpine forest tree species. AForGen Workshop, National Park Adamello-Brenta. Italy. 25-26 June 2012

Stevens, K. A. 2012. PineRefSeq: Experience and challenges in constructing high quality reference genomes for conifers. Noveltree Workshop on genome analysis tools applied to forest tree breeding, Vantaa, Finland. 18 October 2012

2011

Other meetings

Talks

Neale, D. B. 2011. Conifer genome sequencing. Evolutionary origins and development of woody plants. National Evolutionary Synthesis Center. NESCent Catalysis Meeting. Durham, NC. 14-16 October 2011

Neale, D. B. 2011. Forest tree genomics: Genome sequences, marker-based breeding and landscape genomics. Gregor Mendel Institute of Molecular Plant Biology Seminar. Austrian Academy of Science. Vienna, Austria. 27 September 2011

Neale, D. B. 2011. Genomics-based breeding in forest trees: are we there yet? IUFRO Tree Biotechnology Conference. Porto Seguro, Brazil. 25 June – 2 July 2011

Neale, D. B. 2011. Genotype to phenotype forest tree genomics: Genome sequencing (de novo and resequencing), marker-based breeding and landscape genomics. ICRAF Annual Science week Meeting, World Agroforestry Centre, Nairobi, Kenya. 12-17 September 2011

Neale, D. B. 2011. Pine sequencing. EFI 2011 Annual Conference Week. Swedish University of Agriculture Sciences, Uppsala, Sweden. 28-30 September 2011

Neale, D. B. 2011. Project presentation – PineRefSeq Project. AdapTree SAB meeting. Forest Science Centre. U of British Columbia, Vancouver, BC Canada. 9 December 2011

Neale, D. B. 2011. Tree biology – CyberInfrastructure, DNA to the globe. IPlant Collaborative. Tree Biology Meeting. Keating 433, U of Arizona, Tucson, AZ. 6 December 2011